IL_8CWO_026

3D structure

PDB id

8CWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CWO_026 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.0731

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.4

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

25

Unit IDs

8CWO|1|A|G|579
8CWO|1|A|U|580
*
8CWO|1|A|A|622
8CWO|1|A|U|623
8CWO|1|A|A|624
8CWO|1|A|C|625

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain Q

30S ribosomal protein S17