IL_8CWO_038

3D structure

PDB id

8CWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GU(5MC)AA*UAAGUC

Length

11 nucleotides

Bulged bases

8CWO|1|A|A|1480

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CWO_038 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.4594

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8CWO|1|A|G|1392
8CWO|1|A|U|1393
8CWO|1|A|5MC|1394
8CWO|1|A|A|1395
8CWO|1|A|A|1396
*
8CWO|1|A|U|1478
8CWO|1|A|A|1479
8CWO|1|A|A|1480
8CWO|1|A|G|1481
8CWO|1|A|U|1482
8CWO|1|A|C|1483

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain X

30S ribosomal protein bS22

Chain Y

mRNA