IL_8CWO_051

3D structure

PDB id

8CWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

(5MC)AA*UAAG

Length

7 nucleotides

Bulged bases

8CWO|1|A|A|1480

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CWO_051 not in the Motif Atlas

Geometric match to IL_8UO6_002

Geometric discrepancy: 0.2645

The information below is about IL_8UO6_002

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8CWO|1|A|5MC|1394
8CWO|1|A|A|1395
8CWO|1|A|A|1396
*
8CWO|1|A|U|1478
8CWO|1|A|A|1479
8CWO|1|A|A|1480
8CWO|1|A|G|1481

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain X

30S ribosomal protein bS22

Chain Y

mRNA