IL_8D29_004

3D structure

PDB id

8D29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of theophylline aptamer - apo form

Experimental method

X-RAY DIFFRACTION

Resolution

1.81 Å

Loop

Sequence

GAUAC*GCAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8D29_004 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.2407

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8D29|1|F|G|4
8D29|1|F|A|5
8D29|1|F|U|6
8D29|1|F|A|7
8D29|1|F|C|8
*
8D29|1|F|G|27
8D29|1|F|C|28
8D29|1|F|A|29
8D29|1|F|G|30
8D29|1|F|C|31

Current chains

Chain F

RNA (34-MER)

Nearby chains

Chain G

Fab heavy chain

Chain I

Fab light chain

Chain J

RNA (34-MER)