IL_8D2N_002

3D structure

PDB id

8D2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Acidothermus cellulolyticus Cas9 ternary complex (Pre-cleavage)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CCU*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8D2N_002 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1337

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

8D2N|1|B|C|85
8D2N|1|B|C|86
8D2N|1|B|U|87
*
8D2N|1|B|G|97
8D2N|1|B|A|98
8D2N|1|B|G|99

Current chains

Chain B

Single guide RNA (106-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease, Csn1 family