IL_8E30_040

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

8E30|1|I|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E30_040 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1328

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8E30|1|I|C|1043
8E30|1|I|C|1044
8E30|1|I|C|1045
8E30|1|I|A|1046
8E30|1|I|G|1047
8E30|1|I|A|1048
8E30|1|I|C|1049
8E30|1|I|A|1050
8E30|1|I|G|1051
*
8E30|1|I|U|1108
8E30|1|I|C|1109
8E30|1|I|G|1110
8E30|1|I|A|1111
8E30|1|I|G|1112

Current chains

Chain I

23S ribosomal RNA

Nearby chains