IL_8E30_117

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E30_117 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0515

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8E30|1|I|U|1851
8E30|1|I|U|1852
8E30|1|I|A|1853
8E30|1|I|A|1854
8E30|1|I|U|1855
8E30|1|I|U|1856
8E30|1|I|G|1857
8E30|1|I|A|1858
8E30|1|I|U|1859
8E30|1|I|G|1860
*
8E30|1|I|U|1882
8E30|1|I|U|1883
8E30|1|I|G|1884
8E30|1|I|A|1885
8E30|1|I|U|1886
8E30|1|I|C|1887
8E30|1|I|G|1888
8E30|1|I|A|1889
8E30|1|I|A|1890
8E30|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains