IL_8E32_046

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8E32|1|I|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E32_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0983

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8E32|1|I|C|1208
8E32|1|I|U|1209
8E32|1|I|G|1210
8E32|1|I|C|1211
8E32|1|I|G|1212
8E32|1|I|A|1213
8E32|1|I|A|1214
8E32|1|I|G|1215
*
8E32|1|I|U|1234
8E32|1|I|G|1235
8E32|1|I|G|1236
8E32|1|I|A|1237
8E32|1|I|G|1238

Current chains

Chain I

23S ribosomal RNA

Nearby chains