IL_8E32_086

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGAG*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E32_086 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2455

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8E32|1|I|U|2099
8E32|1|I|G|2100
8E32|1|I|A|2101
8E32|1|I|G|2102
*
8E32|1|I|U|2187
8E32|1|I|U|2188
8E32|1|I|U|2189
8E32|1|I|G|2190

Current chains

Chain I

23S ribosomal RNA

Nearby chains