IL_8E33_007
3D structure
- PDB id
- 8E33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound streptogramin analog SAB001
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.23 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8E33_007 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.0641
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8E33|1|I|C|239
8E33|1|I|C|240
8E33|1|I|A|241
8E33|1|I|G|242
8E33|1|I|U|243
8E33|1|I|A|244
8E33|1|I|G|245
*
8E33|1|I|C|253
8E33|1|I|G|254
8E33|1|I|A|255
8E33|1|I|A|256
8E33|1|I|C|257
8E33|1|I|G|258
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
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