IL_8E33_028
3D structure
- PDB id
- 8E33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound streptogramin analog SAB001
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.23 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8E33_028 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.0637
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8E33|1|I|G|856
8E33|1|I|G|857
8E33|1|I|G|858
8E33|1|I|G|859
8E33|1|I|U|860
8E33|1|I|A|861
8E33|1|I|G|862
*
8E33|1|I|C|915
8E33|1|I|G|916
8E33|1|I|A|917
8E33|1|I|A|918
8E33|1|I|U|919
8E33|1|I|A|920
8E33|1|I|C|921
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain J
- 5S ribosomal RNA; 5S rRNA
Coloring options: