IL_8E35_013

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8E35|1|I|A|504, 8E35|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E35_013 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.1127

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8E35|1|I|G|481
8E35|1|I|A|482
8E35|1|I|A|483
8E35|1|I|C|484
*
8E35|1|I|G|496
8E35|1|I|A|497
8E35|1|I|G|498
8E35|1|I|U|499
8E35|1|I|G|500
8E35|1|I|A|501
8E35|1|I|A|502
8E35|1|I|A|503
8E35|1|I|A|504
8E35|1|I|A|505
8E35|1|I|G|506
8E35|1|I|A|507
8E35|1|I|A|508
8E35|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22