IL_8E35_018

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8E35|1|I|G|801, 8E35|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E35_018 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1171

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8E35|1|I|G|674
8E35|1|I|A|675
8E35|1|I|A|676
8E35|1|I|A|677
8E35|1|I|C|678
*
8E35|1|I|G|799
8E35|1|I|A|800
8E35|1|I|G|801
8E35|1|I|A|802
8E35|1|I|U|803
8E35|1|I|A|804
8E35|1|I|G|805
8E35|1|I|C|806

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4