IL_8E35_041

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GAAGGC*GUCGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E35_041 not in the Motif Atlas

Geometric match to IL_9AXU_040

Geometric discrepancy: 0.3969

The information below is about IL_9AXU_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95349.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8E35|1|I|G|1038
8E35|1|I|A|1039
8E35|1|I|A|1040
8E35|1|I|G|1041
8E35|1|I|G|1042
8E35|1|I|C|1043
*
8E35|1|I|G|1112
8E35|1|I|U|1113
8E35|1|I|C|1114
8E35|1|I|G|1115
8E35|1|I|G|1116
8E35|1|I|C|1117

Current chains

Chain I

23S ribosomal RNA

Nearby chains