IL_8E35_093

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E35_093 not in the Motif Atlas

Geometric match to IL_4KQY_003

Geometric discrepancy: 0.3033

The information below is about IL_4KQY_003

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8E35|1|I|C|2456
8E35|1|I|PSU|2457
8E35|1|I|G|2458
8E35|1|I|A|2459
*
8E35|1|I|U|2493
8E35|1|I|G|2494
8E35|1|I|G|2495

Current chains

Chain I

23S ribosomal RNA

Nearby chains