IL_8E35_105

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8E35|1|I|U|2689, 8E35|1|I|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E35_105 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1195

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

8E35|1|I|U|2687
8E35|1|I|G|2688
8E35|1|I|U|2689
8E35|1|I|U|2690
8E35|1|I|C|2691
*
8E35|1|I|G|2718
8E35|1|I|G|2719
8E35|1|I|U|2720
8E35|1|I|A|2721
8E35|1|I|G|2722

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3