IL_8E3L_007

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1094

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8E3L|1|I|C|239
8E3L|1|I|C|240
8E3L|1|I|A|241
8E3L|1|I|G|242
8E3L|1|I|U|243
8E3L|1|I|A|244
8E3L|1|I|G|245
*
8E3L|1|I|C|253
8E3L|1|I|G|254
8E3L|1|I|A|255
8E3L|1|I|A|256
8E3L|1|I|C|257
8E3L|1|I|G|258

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15