IL_8E3L_027

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_027 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.0959

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8E3L|1|I|G|856
8E3L|1|I|G|857
8E3L|1|I|G|858
8E3L|1|I|G|859
8E3L|1|I|U|860
8E3L|1|I|A|861
8E3L|1|I|G|862
*
8E3L|1|I|C|915
8E3L|1|I|G|916
8E3L|1|I|A|917
8E3L|1|I|A|918
8E3L|1|I|U|919
8E3L|1|I|A|920
8E3L|1|I|C|921

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA