IL_8E3L_039

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGGAAG*CGGCCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_039 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3364

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8E3L|1|I|G|1036
8E3L|1|I|G|1037
8E3L|1|I|G|1038
8E3L|1|I|A|1039
8E3L|1|I|A|1040
8E3L|1|I|G|1041
*
8E3L|1|I|C|1114
8E3L|1|I|G|1115
8E3L|1|I|G|1116
8E3L|1|I|C|1117
8E3L|1|I|C|1118
8E3L|1|I|U|1119

Current chains

Chain I

50S ribosomal RNA

Nearby chains