IL_8E3L_099

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_099 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.106

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8E3L|1|I|C|2652
8E3L|1|I|U|2653
8E3L|1|I|A|2654
8E3L|1|I|G|2655
8E3L|1|I|U|2656
8E3L|1|I|A|2657
8E3L|1|I|C|2658
*
8E3L|1|I|G|2663
8E3L|1|I|G|2664
8E3L|1|I|A|2665
8E3L|1|I|C|2666
8E3L|1|I|C|2667
8E3L|1|I|G|2668

Current chains

Chain I

50S ribosomal RNA

Nearby chains