IL_8E3L_117

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_117 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1746

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8E3L|1|I|U|1474
8E3L|1|I|G|1475
8E3L|1|I|U|1476
8E3L|1|I|A|1477
8E3L|1|I|G|1478
*
8E3L|1|I|U|1513
8E3L|1|I|G|1514
8E3L|1|I|A|1515
8E3L|1|I|G|1516
8E3L|1|I|G|1517

Current chains

Chain I

50S ribosomal RNA

Nearby chains