IL_8E3M_022

3D structure

PDB id

8E3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to L-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8E3M|1|I|G|776, 8E3M|1|I|A|788, 8E3M|1|I|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3M_022 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0987

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8E3M|1|I|G|775
8E3M|1|I|G|776
8E3M|1|I|G|777
*
8E3M|1|I|C|787
8E3M|1|I|A|788
8E3M|1|I|A|789
8E3M|1|I|U|790
8E3M|1|I|C|791

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L34