IL_8E41_007

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E41_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0635

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8E41|1|I|C|239
8E41|1|I|C|240
8E41|1|I|A|241
8E41|1|I|G|242
8E41|1|I|U|243
8E41|1|I|A|244
8E41|1|I|G|245
*
8E41|1|I|C|253
8E41|1|I|G|254
8E41|1|I|A|255
8E41|1|I|A|256
8E41|1|I|C|257
8E41|1|I|G|258

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15