IL_8E41_023

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8E41|1|I|G|776, 8E41|1|I|A|788, 8E41|1|I|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E41_023 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0914

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8E41|1|I|G|775
8E41|1|I|G|776
8E41|1|I|G|777
*
8E41|1|I|C|787
8E41|1|I|A|788
8E41|1|I|A|789
8E41|1|I|U|790
8E41|1|I|C|791

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L34