IL_8E41_041

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

8E41|1|I|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E41_041 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1318

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8E41|1|I|C|1043
8E41|1|I|C|1044
8E41|1|I|C|1045
8E41|1|I|A|1046
8E41|1|I|G|1047
8E41|1|I|A|1048
8E41|1|I|C|1049
8E41|1|I|A|1050
8E41|1|I|G|1051
*
8E41|1|I|U|1108
8E41|1|I|C|1109
8E41|1|I|G|1110
8E41|1|I|A|1111
8E41|1|I|G|1112

Current chains

Chain I

50S ribosomal RNA

Nearby chains