IL_8E41_080

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

8E41|1|I|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E41_080 not in the Motif Atlas

Geometric match to IL_7RQB_081

Geometric discrepancy: 0.0556

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

8E41|1|I|A|2070
8E41|1|I|A|2071
*
8E41|1|I|U|2438
8E41|1|I|A|2439
8E41|1|I|C|2440
8E41|1|I|U|2441

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain B

VIRGINIAMYCIN S1

Chain K

50S ribosomal protein L2