IL_8E41_097

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E41_097 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.0714

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8E41|1|I|C|2652
8E41|1|I|U|2653
8E41|1|I|A|2654
8E41|1|I|G|2655
8E41|1|I|U|2656
8E41|1|I|A|2657
8E41|1|I|C|2658
*
8E41|1|I|G|2663
8E41|1|I|G|2664
8E41|1|I|A|2665
8E41|1|I|C|2666
8E41|1|I|C|2667
8E41|1|I|G|2668

Current chains

Chain I

50S ribosomal RNA

Nearby chains