IL_8E42_015
3D structure
- PDB id
- 8E42 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to tiamulin and azithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- UUAAC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8E42_015 not in the Motif Atlas
- Homologous match to IL_5J7L_258
- Geometric discrepancy: 0.0531
- The information below is about IL_5J7L_258
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8E42|1|I|U|606
8E42|1|I|U|607
8E42|1|I|A|608
8E42|1|I|A|609
8E42|1|I|C|610
*
8E42|1|I|G|618
8E42|1|I|G|619
8E42|1|I|G|620
8E42|1|I|A|621
8E42|1|I|G|622
Current chains
- Chain I
- 50S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L4
Coloring options: