IL_8E42_020

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E42_020 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.073

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8E42|1|I|U|703
8E42|1|I|G|704
8E42|1|I|A|705
8E42|1|I|A|706
8E42|1|I|G|707
*
8E42|1|I|U|724
8E42|1|I|G|725
8E42|1|I|G|726
8E42|1|I|A|727
8E42|1|I|G|728

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2