IL_8E43_017

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8E43|1|I|G|801, 8E43|1|I|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E43_017 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0649

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8E43|1|I|G|674
8E43|1|I|A|675
8E43|1|I|A|676
8E43|1|I|A|677
8E43|1|I|C|678
*
8E43|1|I|G|799
8E43|1|I|A|800
8E43|1|I|G|801
8E43|1|I|A|802
8E43|1|I|U|803
8E43|1|I|A|804
8E43|1|I|G|805
8E43|1|I|C|806

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4