IL_8E43_046

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8E43|1|I|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E43_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.08

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8E43|1|I|C|1208
8E43|1|I|U|1209
8E43|1|I|G|1210
8E43|1|I|C|1211
8E43|1|I|G|1212
8E43|1|I|A|1213
8E43|1|I|A|1214
8E43|1|I|G|1215
*
8E43|1|I|U|1234
8E43|1|I|G|1235
8E43|1|I|G|1236
8E43|1|I|A|1237
8E43|1|I|G|1238

Current chains

Chain I

23S ribosomal RNA

Nearby chains