IL_8E43_101

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E43_101 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0823

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8E43|1|I|C|2652
8E43|1|I|U|2653
8E43|1|I|A|2654
8E43|1|I|G|2655
8E43|1|I|U|2656
8E43|1|I|A|2657
8E43|1|I|C|2658
*
8E43|1|I|G|2663
8E43|1|I|G|2664
8E43|1|I|A|2665
8E43|1|I|C|2666
8E43|1|I|C|2667
8E43|1|I|G|2668

Current chains

Chain I

23S ribosomal RNA

Nearby chains