IL_8E43_118

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E43_118 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0549

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8E43|1|I|G|1666
8E43|1|I|G|1667
8E43|1|I|A|1668
8E43|1|I|A|1669
8E43|1|I|C|1670
8E43|1|I|U|1671
8E43|1|I|A|1672
8E43|1|I|G|1673
8E43|1|I|G|1674
*
8E43|1|I|C|1990
8E43|1|I|U|1991
8E43|1|I|G|1992
8E43|1|I|U|1993
8E43|1|I|C|1994

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3