IL_8E45_119

3D structure

PDB id

8E45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC17

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAGG*UCGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E45_119 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.2663

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

8E45|1|I|G|1038
8E45|1|I|A|1039
8E45|1|I|A|1040
8E45|1|I|G|1041
8E45|1|I|G|1042
*
8E45|1|I|U|1113
8E45|1|I|C|1114
8E45|1|I|G|1115
8E45|1|I|G|1116
8E45|1|I|C|1117

Current chains

Chain I

23S ribosomal RNA

Nearby chains