IL_8E45_123

3D structure

PDB id

8E45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC17

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E45_123 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0788

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8E45|1|I|U|1851
8E45|1|I|U|1852
8E45|1|I|A|1853
8E45|1|I|A|1854
8E45|1|I|U|1855
8E45|1|I|U|1856
8E45|1|I|G|1857
8E45|1|I|A|1858
8E45|1|I|U|1859
8E45|1|I|G|1860
*
8E45|1|I|U|1882
8E45|1|I|U|1883
8E45|1|I|G|1884
8E45|1|I|A|1885
8E45|1|I|U|1886
8E45|1|I|C|1887
8E45|1|I|G|1888
8E45|1|I|A|1889
8E45|1|I|A|1890
8E45|1|I|G|1891

Current chains

Chain I

23S ribosomal RNA

Nearby chains