IL_8E46_023

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8E46|1|I|G|776, 8E46|1|I|A|788, 8E46|1|I|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E46_023 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.1169

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8E46|1|I|G|775
8E46|1|I|G|776
8E46|1|I|G|777
*
8E46|1|I|C|787
8E46|1|I|A|788
8E46|1|I|A|789
8E46|1|I|U|790
8E46|1|I|C|791

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L34