IL_8E46_123

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E46_123 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2724

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8E46|1|I|C|1526
8E46|1|I|G|1527
8E46|1|I|A|1528
8E46|1|I|G|1529
8E46|1|I|G|1530
*
8E46|1|I|C|1541
8E46|1|I|U|1542
8E46|1|I|G|1543
8E46|1|I|A|1544
8E46|1|I|A|1545
8E46|1|I|G|1546

Current chains

Chain I

23S ribosomal RNA

Nearby chains