IL_8E47_013

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8E47|1|I|A|504, 8E47|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E47_013 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.119

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8E47|1|I|G|481
8E47|1|I|A|482
8E47|1|I|A|483
8E47|1|I|C|484
*
8E47|1|I|G|496
8E47|1|I|A|497
8E47|1|I|G|498
8E47|1|I|U|499
8E47|1|I|G|500
8E47|1|I|A|501
8E47|1|I|A|502
8E47|1|I|A|503
8E47|1|I|A|504
8E47|1|I|A|505
8E47|1|I|G|506
8E47|1|I|A|507
8E47|1|I|A|508
8E47|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22