IL_8E47_029

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E47_029 not in the Motif Atlas

Homologous match to IL_5J7L_270

Geometric discrepancy: 0.1085

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8E47|1|I|G|856
8E47|1|I|G|857
8E47|1|I|G|858
8E47|1|I|G|859
8E47|1|I|U|860
8E47|1|I|A|861
8E47|1|I|G|862
*
8E47|1|I|C|915
8E47|1|I|G|916
8E47|1|I|A|917
8E47|1|I|A|918
8E47|1|I|U|919
8E47|1|I|A|920
8E47|1|I|C|921

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA