IL_8E48_061

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GGCAC*GUGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E48_061 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2998

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

8E48|1|I|G|1529
8E48|1|I|G|1530
8E48|1|I|C|1531
8E48|1|I|A|1532
8E48|1|I|C|1533
*
8E48|1|I|G|1538
8E48|1|I|U|1539
8E48|1|I|G|1540
8E48|1|I|C|1541
8E48|1|I|U|1542

Current chains

Chain I

23S ribosomal RNA

Nearby chains