IL_8E5T_008

3D structure

PDB id

8E5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E5T_008 not in the Motif Atlas

Geometric match to IL_4WF9_007

Geometric discrepancy: 0.2327

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8E5T|1|1|U|302
8E5T|1|1|G|303
8E5T|1|1|G|304
*
8E5T|1|1|C|312
8E5T|1|1|A|313

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain b

Ribosome biogenesis protein BRX1

Chain i

60S ribosomal protein L36-A

Chain p

ATP-dependent RNA helicase HAS1