IL_8E5T_013

3D structure

PDB id

8E5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E5T_013 not in the Motif Atlas

Geometric match to IL_7RQB_030

Geometric discrepancy: 0.2741

The information below is about IL_7RQB_030

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8E5T|1|1|C|526
8E5T|1|1|A|527
8E5T|1|1|U|528
*
8E5T|1|1|G|564
8E5T|1|1|U|565
8E5T|1|1|G|566

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14-A

Chain S

60S ribosomal protein L20-A