IL_8E5T_025

3D structure

PDB id

8E5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8E5T|1|1|A|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E5T_025 not in the Motif Atlas

Homologous match to IL_5TBW_060

Geometric discrepancy: 0.3499

The information below is about IL_5TBW_060

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8E5T|1|1|U|1398
8E5T|1|1|A|1399
8E5T|1|1|G|1400
*
8E5T|1|1|C|1411
8E5T|1|1|G|1412

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 6

NOC2 isoform 1

Chain e

60S ribosomal protein L32