IL_8EIU_182

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EIU_182 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0652

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8EIU|1|a|U|1851
8EIU|1|a|U|1852
8EIU|1|a|A|1853
8EIU|1|a|A|1854
8EIU|1|a|U|1855
8EIU|1|a|U|1856
8EIU|1|a|G|1857
8EIU|1|a|A|1858
8EIU|1|a|U|1859
8EIU|1|a|G|1860
*
8EIU|1|a|U|1882
8EIU|1|a|U|1883
8EIU|1|a|G|1884
8EIU|1|a|A|1885
8EIU|1|a|U|1886
8EIU|1|a|C|1887
8EIU|1|a|G|1888
8EIU|1|a|A|1889
8EIU|1|a|A|1890
8EIU|1|a|G|1891

Current chains

Chain a

23S rRNA

Nearby chains