IL_8EKB_010

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

8EKB|1|1A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_010 not in the Motif Atlas

Geometric match to IL_7RQB_011

Geometric discrepancy: 0.0769

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8EKB|1|1A|C|280
8EKB|1|1A|G|281
8EKB|1|1A|A|282
8EKB|1|1A|A|283
8EKB|1|1A|U|284
*
8EKB|1|1A|A|357
8EKB|1|1A|U|358
8EKB|1|1A|A|359
8EKB|1|1A|G|360

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains