IL_8EKB_083

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_083 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3836

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8EKB|1|1A|G|2124
8EKB|1|1A|G|2125
8EKB|1|1A|A|2126
8EKB|1|1A|G|2127
*
8EKB|1|1A|C|2161
8EKB|1|1A|G|2162
8EKB|1|1A|C|2163
8EKB|1|1A|C|2164
8EKB|1|1A|G|2165
8EKB|1|1A|G|2166
8EKB|1|1A|U|2167
8EKB|1|1A|G|2168
8EKB|1|1A|A|2169
8EKB|1|1A|A|2170
8EKB|1|1A|A|2171
8EKB|1|1A|U|2172
8EKB|1|1A|A|2173
8EKB|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains