IL_8EKB_138
3D structure
- PDB id
- 8EKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAAAGAC*GGGGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EKB_138 not in the Motif Atlas
- Homologous match to IL_4LFB_026
- Geometric discrepancy: 0.2369
- The information below is about IL_4LFB_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8EKB|1|1a|U|605
8EKB|1|1a|G|606
8EKB|1|1a|A|607
8EKB|1|1a|A|608
8EKB|1|1a|A|609
8EKB|1|1a|G|610
8EKB|1|1a|A|611
8EKB|1|1a|C|612
*
8EKB|1|1a|G|628
8EKB|1|1a|G|629
8EKB|1|1a|G|630
8EKB|1|1a|G|631
8EKB|1|1a|A|632
8EKB|1|1a|G|633
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1h
- 30S ribosomal protein S8
- Chain 1p
- 30S ribosomal protein S16
- Chain 1q
- 30S ribosomal protein S17
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