IL_8EKB_186

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

8EKB|1|2A|U|504, 8EKB|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_186 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0501

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8EKB|1|2A|G|481
8EKB|1|2A|A|482
8EKB|1|2A|A|483
8EKB|1|2A|C|484
*
8EKB|1|2A|G|496
8EKB|1|2A|A|497
8EKB|1|2A|G|498
8EKB|1|2A|U|499
8EKB|1|2A|G|500
8EKB|1|2A|A|501
8EKB|1|2A|A|502
8EKB|1|2A|A|503
8EKB|1|2A|U|504
8EKB|1|2A|A|505
8EKB|1|2A|G|506
8EKB|1|2A|A|507
8EKB|1|2A|G|508
8EKB|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24