3D structure

PDB id
8EKB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GCGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EKB_252 not in the Motif Atlas
Homologous match to IL_3U4M_002
Geometric discrepancy: 0.4314
The information below is about IL_3U4M_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_32056.1
Basepair signature
cWW-L-cWW-L-L-tWH-R-L-R-L
Number of instances in this motif group
3

Unit IDs

8EKB|1|2A|G|2110
8EKB|1|2A|C|2111
8EKB|1|2A|G|2112
8EKB|1|2A|U|2113
8EKB|1|2A|A|2114
8EKB|1|2A|G|2115
8EKB|1|2A|G|2116
8EKB|1|2A|A|2117
8EKB|1|2A|U|2118
8EKB|1|2A|A|2119
8EKB|1|2A|G|2120
*
8EKB|1|2A|C|2178
8EKB|1|2A|C|2179

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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