IL_8EKB_295

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

8EKB|1|2a|G|251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_295 not in the Motif Atlas

Homologous match to IL_5J7L_015

Geometric discrepancy: 0.0972

The information below is about IL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8EKB|1|2a|U|249
8EKB|1|2a|A|250
8EKB|1|2a|G|251
8EKB|1|2a|U|252
*
8EKB|1|2a|A|274
8EKB|1|2a|G|275

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2q

30S ribosomal protein S17